J4_9PIJ_005

3D structure

PDB id

9PIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9PIJ|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9PIJ_005 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.247

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9PIJ|1|a|C|268
9PIJ|1|a|C|269
*
9PIJ|1|a|G|370
9PIJ|1|a|A|371
9PIJ|1|a|G|372
9PIJ|1|a|U|373
9PIJ|1|a|A|374
9PIJ|1|a|G|375
*
9PIJ|1|a|U|399
9PIJ|1|a|G|400
9PIJ|1|a|A|401
9PIJ|1|a|A|402
9PIJ|1|a|U|403
9PIJ|1|a|A|404
9PIJ|1|a|U|405
9PIJ|1|a|G|406
*
9PIJ|1|a|C|421
9PIJ|1|a|A|422
9PIJ|1|a|A|423
9PIJ|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

50S ribosomal protein L28