J4_9PJ7_010

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UC*GGUGAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

9PJ7|1|a|G|1417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9PJ7_010 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.1366

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9PJ7|1|a|U|1389
9PJ7|1|a|C|1390
*
9PJ7|1|a|G|1414
9PJ7|1|a|G|1415
9PJ7|1|a|U|1416
9PJ7|1|a|G|1417
9PJ7|1|a|A|1418
9PJ7|1|a|G|1419
*
9PJ7|1|a|C|1480
9PJ7|1|a|C|1481
*
9PJ7|1|a|G|1781
9PJ7|1|a|C|1782
9PJ7|1|a|C|1783
9PJ7|1|a|C|1784
9PJ7|1|a|G|1785
9PJ7|1|a|U|1786
9PJ7|1|a|A|1787

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23