J4_9PJ8_014
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 9PJ8|1|a|A|2470
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9PJ8_014 not in the Motif Atlas
- Homologous match to J4_7A0S_009
- Geometric discrepancy: 0.2377
- The information below is about J4_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9PJ8|1|a|C|2467
9PJ8|1|a|A|2468
9PJ8|1|a|A|2469
9PJ8|1|a|A|2470
9PJ8|1|a|G|2471
*
9PJ8|1|a|U|2525
9PJ8|1|a|U|2526
9PJ8|1|a|G|2527
9PJ8|1|a|A|2528
9PJ8|1|a|C|2529
*
9PJ8|1|a|G|2552
9PJ8|1|a|G|2553
9PJ8|1|a|G|2554
*
9PJ8|1|a|C|2563
9PJ8|1|a|G|2564
9PJ8|1|a|G|2565
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain 2
- Large ribosomal subunit protein bL35
- Chain v
- 50S ribosomal protein L27
Coloring options: