J4_9PJ9_003
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGG*CGAAAG*CUGUAAACGGUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9PJ9|1|A|A|797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9PJ9_003 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.0931
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9PJ9|1|A|G|557
9PJ9|1|A|G|558
9PJ9|1|A|G|559
*
9PJ9|1|A|C|746
9PJ9|1|A|G|747
9PJ9|1|A|A|748
9PJ9|1|A|A|749
9PJ9|1|A|A|750
9PJ9|1|A|G|751
*
9PJ9|1|A|C|792
9PJ9|1|A|U|793
9PJ9|1|A|G|794
9PJ9|1|A|U|795
9PJ9|1|A|A|796
9PJ9|1|A|A|797
9PJ9|1|A|A|798
9PJ9|1|A|C|799
9PJ9|1|A|G|800
9PJ9|1|A|G|801
9PJ9|1|A|U|802
9PJ9|1|A|G|803
*
9PJ9|1|A|C|863
9PJ9|1|A|C|864
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
- Chain X
- AURKAIP1/COX24 domain-containing protein
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: