J4_9PKG_009

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(UY1)G

Length

21 nucleotides

Bulged bases

9PKG|1|L5|UY1|3818

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|C|3696
9PKG|1|L5|U|3697
9PKG|1|L5|G|3698
*
9PKG|1|L5|C|3752
9PKG|1|L5|G|3753
*
9PKG|1|L5|C|3771
9PKG|1|L5|U|3772
9PKG|1|L5|U|3773
9PKG|1|L5|A|3774
9PKG|1|L5|A|3775
9PKG|1|L5|G|3776
9PKG|1|L5|G|3777
9PKG|1|L5|U|3778
9PKG|1|L5|A|3779
9PKG|1|L5|G|3780
*
9PKG|1|L5|U|3814
9PKG|1|L5|G|3815
9PKG|1|L5|A|3816
9PKG|1|L5|A|3817
9PKG|1|L5|UY1|3818
9PKG|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain Pt

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA