J4_9PKG_011

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUA(A2M)*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

9PKG|1|L5|U|4677

QA status

Modified nucleotides: A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|G|4587
9PKG|1|L5|U|4588
9PKG|1|L5|A|4589
9PKG|1|L5|A2M|4590
*
9PKG|1|L5|OMU|4620
9PKG|1|L5|C|4621
*
9PKG|1|L5|G|4676
9PKG|1|L5|U|4677
9PKG|1|L5|G|4678
*
9PKG|1|L5|C|4712
9PKG|1|L5|G|4713
9PKG|1|L5|C|4714
9PKG|1|L5|C|4715

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23