J4_9Q1S_005
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9Q1S|1|5|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1S|1|5|G|2406
9Q1S|1|5|G|2407
9Q1S|1|5|U|2408
9Q1S|1|5|U|2409
9Q1S|1|5|C|2410
*
9Q1S|1|5|G|2434
9Q1S|1|5|G|2435
9Q1S|1|5|U|2436
9Q1S|1|5|C|2437
9Q1S|1|5|A|2438
9Q1S|1|5|G|2439
*
9Q1S|1|5|U|2538
9Q1S|1|5|C|2539
*
9Q1S|1|5|G|2777
9Q1S|1|5|G|2778
9Q1S|1|5|C|2779
9Q1S|1|5|C|2780
9Q1S|1|5|G|2781
9Q1S|1|5|U|2782
9Q1S|1|5|A|2783
9Q1S|1|5|C|2784
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- 60S ribosomal protein L19
- Chain X
- Large ribosomal subunit protein uL23
- Chain g
- 60S ribosomal protein L34
- Chain j
- 60S ribosomal protein L37
- Chain k
- Large ribosomal subunit protein eL38
- Chain l
- 60S ribosomal protein L39
Coloring options: