J4_9Q3R_003

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9Q3R|1|A|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Q3R_003 not in the Motif Atlas

Homologous match to J4_8B0X_006

Geometric discrepancy: 0.1503

The information below is about J4_8B0X_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q3R|1|A|C|601
9Q3R|1|A|A|602
9Q3R|1|A|A|603
9Q3R|1|A|G|604
*
9Q3R|1|A|C|624
9Q3R|1|A|G|625
9Q3R|1|A|A|626
9Q3R|1|A|A|627
9Q3R|1|A|G|628
*
9Q3R|1|A|C|635
9Q3R|1|A|G|636
9Q3R|1|A|A|637
9Q3R|1|A|G|638
*
9Q3R|1|A|C|650
9Q3R|1|A|G|651
9Q3R|1|A|U|652
9Q3R|1|A|U|653
9Q3R|1|A|A|654
9Q3R|1|A|A|655
9Q3R|1|A|G|656

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain E

Large ribosomal subunit protein uL4

Chain N

50S ribosomal protein L15