J4_9Q3R_004
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 9Q3R|1|A|G|1271, 9Q3R|1|A|A|1272, 9Q3R|1|A|U|1273, 9Q3R|1|A|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q3R_004 not in the Motif Atlas
- Homologous match to J4_8B0X_007
- Geometric discrepancy: 0.0358
- The information below is about J4_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_19484.1
- Basepair signature
- cWW-F-cWW-F-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
9Q3R|1|A|C|1270
9Q3R|1|A|G|1271
9Q3R|1|A|A|1272
9Q3R|1|A|U|1273
9Q3R|1|A|A|1274
9Q3R|1|A|A|1275
9Q3R|1|A|A|1276
*
9Q3R|1|A|U|1294
9Q3R|1|A|C|1295
*
9Q3R|1|A|G|1645
9Q3R|1|A|C|1646
9Q3R|1|A|U|1647
9Q3R|1|A|U|1648
*
9Q3R|1|A|A|2009
9Q3R|1|A|G|2010
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain P
- Large ribosomal subunit protein bL17
- Chain U
- 50S ribosomal protein L22
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