J4_9Q3R_006
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 9Q3R|1|A|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q3R_006 not in the Motif Atlas
- Homologous match to J4_8B0X_009
- Geometric discrepancy: 0.0344
- The information below is about J4_8B0X_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.2
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
9Q3R|1|A|U|1313
9Q3R|1|A|C|1314
*
9Q3R|1|A|G|1338
9Q3R|1|A|G|1339
9Q3R|1|A|U|1340
9Q3R|1|A|G|1341
9Q3R|1|A|A|1342
9Q3R|1|A|G|1343
*
9Q3R|1|A|C|1404
9Q3R|1|A|U|1405
*
9Q3R|1|A|A|1597
9Q3R|1|A|A|1598
9Q3R|1|A|U|1599
9Q3R|1|A|C|1600
9Q3R|1|A|G|1601
9Q3R|1|A|U|1602
9Q3R|1|A|A|1603
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain V
- 50S ribosomal protein L23
Coloring options: