J4_9Q3R_011
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q3R_011 not in the Motif Atlas
- Homologous match to J4_8B0X_014
- Geometric discrepancy: 0.0385
- The information below is about J4_8B0X_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.5
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9Q3R|1|A|G|2643
9Q3R|1|A|G|2644
9Q3R|1|A|G|2645
9Q3R|1|A|C|2646
*
9Q3R|1|A|G|2674
9Q3R|1|A|A|2675
9Q3R|1|A|C|2676
*
9Q3R|1|A|G|2731
9Q3R|1|A|G|2732
9Q3R|1|A|A|2733
9Q3R|1|A|A|2734
9Q3R|1|A|G|2735
*
9Q3R|1|A|U|2769
9Q3R|1|A|G|2770
9Q3R|1|A|C|2771
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain L
- Large ribosomal subunit protein uL13
- Chain M
- Large ribosomal subunit protein uL14
Coloring options: