J4_9Q3R_014
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9Q3R|1|a|C|576, 9Q3R|1|a|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q3R_014 not in the Motif Atlas
- Homologous match to J4_8B0X_003
- Geometric discrepancy: 0.0289
- The information below is about J4_8B0X_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.3
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
9Q3R|1|a|G|575
9Q3R|1|a|C|576
9Q3R|1|a|G|577
*
9Q3R|1|a|C|764
9Q3R|1|a|G|765
9Q3R|1|a|A|766
9Q3R|1|a|A|767
9Q3R|1|a|A|768
9Q3R|1|a|G|769
*
9Q3R|1|a|C|810
9Q3R|1|a|C|811
9Q3R|1|a|G|812
9Q3R|1|a|U|813
9Q3R|1|a|A|814
9Q3R|1|a|A|815
9Q3R|1|a|A|816
9Q3R|1|a|C|817
9Q3R|1|a|G|818
9Q3R|1|a|A|819
9Q3R|1|a|U|820
9Q3R|1|a|G|821
*
9Q3R|1|a|C|879
9Q3R|1|a|C|880
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain h
- Small ribosomal subunit protein uS8
- Chain k
- Small ribosomal subunit protein uS11
- Chain l
- Small ribosomal subunit protein uS12
- Chain o
- Small ribosomal subunit protein uS15
- Chain q
- Small ribosomal subunit protein uS17
- Chain u
- Small ribosomal subunit protein bS21
Coloring options: