J4_9Q87_014
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 9Q87|1|a|A|2292
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q87_014 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.0421
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9Q87|1|a|C|2289
9Q87|1|a|G|2290
9Q87|1|a|A|2291
9Q87|1|a|A|2292
9Q87|1|a|G|2293
*
9Q87|1|a|U|2347
9Q87|1|a|U|2348
9Q87|1|a|G|2349
9Q87|1|a|A|2350
9Q87|1|a|C|2351
*
9Q87|1|a|G|2374
9Q87|1|a|G|2375
9Q87|1|a|U|2376
*
9Q87|1|a|A|2385
9Q87|1|a|G|2386
9Q87|1|a|G|2387
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL33
- Chain 2
- Large ribosomal subunit protein bL35
- Chain n
- Large ribosomal subunit protein uL18
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: