J4_9QEG_001
3D structure
- PDB id
- 9QEG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.21 Å
Loop
- Sequence
- AUGG*CGU*AAGGCG*CU
- Length
- 15 nucleotides
- Bulged bases
- 9QEG|1|8|U|8, 9QEG|1|8|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9QEG_001 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.2327
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
9QEG|1|8|A|7
9QEG|1|8|U|8
9QEG|1|8|G|9
9QEG|1|8|G|10
*
9QEG|1|8|C|26
9QEG|1|8|G|27
9QEG|1|8|U|28
*
9QEG|1|8|A|44
9QEG|1|8|A|45
9QEG|1|8|G|46
9QEG|1|8|G|47
9QEG|1|8|C|49
9QEG|1|8|G|50
*
9QEG|1|8|C|66
9QEG|1|8|U|67
Current chains
- Chain 8
- P-site tRNA molecule
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Am
- Small ribosomal subunit protein uS13
- Chain K
- Large ribosomal subunit protein uL16
Coloring options: