J4_9QEG_002

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

9QEG|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9QEG_002 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1118

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9QEG|1|A|C|271
9QEG|1|A|C|272
*
9QEG|1|A|G|416
9QEG|1|A|A|417
9QEG|1|A|G|418
9QEG|1|A|U|419
9QEG|1|A|A|420
9QEG|1|A|C|421
*
9QEG|1|A|G|445
9QEG|1|A|G|446
9QEG|1|A|A|447
9QEG|1|A|A|448
9QEG|1|A|U|449
9QEG|1|A|C|450
9QEG|1|A|U|451
9QEG|1|A|G|452
*
9QEG|1|A|U|467
9QEG|1|A|A|468
9QEG|1|A|A|469
9QEG|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein bL28