J4_9QEG_012

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

9QEG|1|A|A|2760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9QEG_012 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.5483

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9QEG|1|A|G|2670
9QEG|1|A|A|2671
9QEG|1|A|G|2672
9QEG|1|A|C|2673
*
9QEG|1|A|G|2701
9QEG|1|A|A|2702
9QEG|1|A|C|2703
*
9QEG|1|A|G|2758
9QEG|1|A|G|2759
9QEG|1|A|A|2760
9QEG|1|A|C|2761
9QEG|1|A|G|2762
*
9QEG|1|A|C|2796
9QEG|1|A|C|2797
9QEG|1|A|C|2798

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain H

Large ribosomal subunit protein uL13

Chain I

Large ribosomal subunit protein uL14