J4_9QEH_001

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

9QEH|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9QEH_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1044

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9QEH|1|A|C|271
9QEH|1|A|C|272
*
9QEH|1|A|G|416
9QEH|1|A|A|417
9QEH|1|A|G|418
9QEH|1|A|U|419
9QEH|1|A|A|420
9QEH|1|A|C|421
*
9QEH|1|A|G|445
9QEH|1|A|G|446
9QEH|1|A|A|447
9QEH|1|A|A|448
9QEH|1|A|U|449
9QEH|1|A|C|450
9QEH|1|A|U|451
9QEH|1|A|G|452
*
9QEH|1|A|U|467
9QEH|1|A|A|468
9QEH|1|A|A|469
9QEH|1|A|G|470

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

Large ribosomal subunit protein bL28