J4_9QEH_008

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9QEH_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0399

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9QEH|1|A|G|1799
9QEH|1|A|A|1800
9QEH|1|A|C|1801
9QEH|1|A|U|1802
9QEH|1|A|G|1803
*
9QEH|1|A|C|1815
9QEH|1|A|A|1816
9QEH|1|A|C|1817
9QEH|1|A|A|1818
9QEH|1|A|G|1819
*
9QEH|1|A|U|1854
9QEH|1|A|G|1855
9QEH|1|A|A|1856
9QEH|1|A|C|1857
*
9QEH|1|A|G|2002
9QEH|1|A|U|2003
9QEH|1|A|A|2004
9QEH|1|A|A|2005
9QEH|1|A|C|2006

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2