3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
GGUUC*GGUCAG*UC*GGCCGUAC
Length
21 nucleotides
Bulged bases
9QIW|1|L5|C|2437
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9QIW_003 not in the Motif Atlas
Homologous match to J4_8P9A_015
Geometric discrepancy: 0.0948
The information below is about J4_8P9A_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_47264.1
Basepair signature
cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

9QIW|1|L5|G|2406
9QIW|1|L5|G|2407
9QIW|1|L5|U|2408
9QIW|1|L5|U|2409
9QIW|1|L5|C|2410
*
9QIW|1|L5|G|2434
9QIW|1|L5|G|2435
9QIW|1|L5|U|2436
9QIW|1|L5|C|2437
9QIW|1|L5|A|2438
9QIW|1|L5|G|2439
*
9QIW|1|L5|U|2538
9QIW|1|L5|C|2539
*
9QIW|1|L5|G|2777
9QIW|1|L5|G|2778
9QIW|1|L5|C|2779
9QIW|1|L5|C|2780
9QIW|1|L5|G|2781
9QIW|1|L5|U|2782
9QIW|1|L5|A|2783
9QIW|1|L5|C|2784

Current chains

Chain L5
28S rRNA

Nearby chains

Chain CD
GTP-binding protein 4
Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LR
60S ribosomal protein L19
Chain LX
60S ribosomal protein L23a
Chain Lg
60S ribosomal protein L34
Chain Lj
Large ribosomal subunit protein eL37
Chain Lk
60S ribosomal protein L38
Chain Ll
60S ribosomal protein L39

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2802 s