J4_9QQA_013

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU*A(PSU)GA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQA|1|B5|G|3366
9QQA|1|B5|A|3367
9QQA|1|B5|C|3368
9QQA|1|B5|PSU|3369
9QQA|1|B5|G|3370
*
9QQA|1|B5|C|3382
9QQA|1|B5|A|3383
9QQA|1|B5|A|3384
9QQA|1|B5|A|3385
9QQA|1|B5|G|3386
*
9QQA|1|B5|U|3422
9QQA|1|B5|G|3423
9QQA|1|B5|A|3424
9QQA|1|B5|U|3425
9QQA|1|B5|U|3426
*
9QQA|1|B5|A|3553
9QQA|1|B5|PSU|3554
9QQA|1|B5|G|3555
9QQA|1|B5|A|3556
9QQA|1|B5|A2M|3557
9QQA|1|B5|C|3558

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Az

Small ribosomal subunit protein eS32

Chain BA

Large ribosomal subunit protein uL2

Chain Bp

60S ribosomal protein L37a