J4_9QQB_008

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

9QQB|1|B5|A|2209, 9QQB|1|B5|U|2212, 9QQB|1|B5|U|2671

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQB|1|B5|OMC|2208
9QQB|1|B5|A|2209
9QQB|1|B5|A|2210
9QQB|1|B5|A|2211
9QQB|1|B5|U|2212
9QQB|1|B5|A|2213
9QQB|1|B5|U|2214
*
9QQB|1|B5|A|2232
9QQB|1|B5|G|2233
9QQB|1|B5|G|2234
*
9QQB|1|B5|OMC|2667
9QQB|1|B5|A|2668
9QQB|1|B5|U|2669
9QQB|1|B5|G|2670
9QQB|1|B5|U|2671
9QQB|1|B5|U|2672
*
9QQB|1|B5|A|3588
9QQB|1|B5|G|3589

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BP

Large ribosomal subunit protein uL22

Chain BR

Ribosomal protein L19

Chain Bd

60S ribosomal protein L31

Chain Nu

Isoform 2 of Transcription factor BTF3