J4_9QQB_014

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(UY1)G

Length

21 nucleotides

Bulged bases

9QQB|1|B5|UY1|3550

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQB|1|B5|C|3428
9QQB|1|B5|U|3429
9QQB|1|B5|G|3430
*
9QQB|1|B5|C|3484
9QQB|1|B5|G|3485
*
9QQB|1|B5|C|3503
9QQB|1|B5|U|3504
9QQB|1|B5|U|3505
9QQB|1|B5|A|3506
9QQB|1|B5|A|3507
9QQB|1|B5|G|3508
9QQB|1|B5|G|3509
9QQB|1|B5|U|3510
9QQB|1|B5|A|3511
9QQB|1|B5|G|3512
*
9QQB|1|B5|U|3546
9QQB|1|B5|G|3547
9QQB|1|B5|A|3548
9QQB|1|B5|A|3549
9QQB|1|B5|UY1|3550
9QQB|1|B5|G|3551

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain AT

Transfer RNA; tRNA

Chain Az

Small ribosomal subunit protein eS32

Chain BA

Large ribosomal subunit protein uL2