J4_9QQQ_006

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9QQQ|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9QQQ_006 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2741

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9QQQ|1|a|C|268
9QQQ|1|a|C|269
*
9QQQ|1|a|G|370
9QQQ|1|a|A|371
9QQQ|1|a|G|372
9QQQ|1|a|U|373
9QQQ|1|a|A|374
9QQQ|1|a|G|375
*
9QQQ|1|a|U|399
9QQQ|1|a|G|400
9QQQ|1|a|A|401
9QQQ|1|a|A|402
9QQQ|1|a|U|403
9QQQ|1|a|A|404
9QQQ|1|a|U|405
9QQQ|1|a|G|406
*
9QQQ|1|a|C|421
9QQQ|1|a|A|422
9QQQ|1|a|A|423
9QQQ|1|a|G|424

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28