J4_9QSJ_006

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9QSJ|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9QSJ_006 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2754

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9QSJ|1|a|C|268
9QSJ|1|a|C|269
*
9QSJ|1|a|G|370
9QSJ|1|a|A|371
9QSJ|1|a|G|372
9QSJ|1|a|U|373
9QSJ|1|a|A|374
9QSJ|1|a|G|375
*
9QSJ|1|a|U|399
9QSJ|1|a|G|400
9QSJ|1|a|A|401
9QSJ|1|a|A|402
9QSJ|1|a|U|403
9QSJ|1|a|A|404
9QSJ|1|a|U|405
9QSJ|1|a|G|406
*
9QSJ|1|a|C|421
9QSJ|1|a|A|422
9QSJ|1|a|A|423
9QSJ|1|a|G|424

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28