J4_9R3A_006

3D structure

PDB id

9R3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9R3A|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9R3A_006 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2375

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9R3A|1|a|C|268
9R3A|1|a|C|269
*
9R3A|1|a|G|370
9R3A|1|a|A|371
9R3A|1|a|G|372
9R3A|1|a|U|373
9R3A|1|a|A|374
9R3A|1|a|G|375
*
9R3A|1|a|U|399
9R3A|1|a|G|400
9R3A|1|a|A|401
9R3A|1|a|A|402
9R3A|1|a|U|403
9R3A|1|a|A|404
9R3A|1|a|U|405
9R3A|1|a|G|406
*
9R3A|1|a|C|421
9R3A|1|a|A|422
9R3A|1|a|A|423
9R3A|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28