J4_9R3A_007

3D structure

PDB id

9R3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9R3A_007 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1259

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9R3A|1|a|G|297
9R3A|1|a|G|298
9R3A|1|a|A|299
9R3A|1|a|A|300
9R3A|1|a|G|301
*
9R3A|1|a|C|316
9R3A|1|a|G|317
9R3A|1|a|C|318
9R3A|1|a|G|319
*
9R3A|1|a|C|323
9R3A|1|a|A|324
9R3A|1|a|G|325
*
9R3A|1|a|C|337
9R3A|1|a|G|338
9R3A|1|a|U|339
9R3A|1|a|A|340
9R3A|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24