J4_9R3A_013

3D structure

PDB id

9R3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9R3A_013 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0933

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9R3A|1|a|A|1772
9R3A|1|a|A|1773
9R3A|1|a|C|1774
9R3A|1|a|U|1775
9R3A|1|a|G|1776
*
9R3A|1|a|C|1788
9R3A|1|a|A|1789
9R3A|1|a|C|1790
9R3A|1|a|A|1791
9R3A|1|a|G|1792
*
9R3A|1|a|U|1827
9R3A|1|a|G|1828
9R3A|1|a|A|1829
9R3A|1|a|C|1830
*
9R3A|1|a|G|1975
9R3A|1|a|U|1976
9R3A|1|a|A|1977
9R3A|1|a|A|1978
9R3A|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2