J4_9R9O_002

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UC*GAGUCG*CUAAGUG*UAAA

Length

19 nucleotides

Bulged bases

9R9O|1|C1|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9R9O_002 not in the Motif Atlas

Homologous match to J4_9PN5_001

Geometric discrepancy: 0.0919

The information below is about J4_9PN5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.4

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9R9O|1|C1|U|112
9R9O|1|C1|C|113
*
9R9O|1|C1|G|267
9R9O|1|C1|A|268
9R9O|1|C1|G|269
9R9O|1|C1|U|270
9R9O|1|C1|C|271
9R9O|1|C1|G|272
*
9R9O|1|C1|C|293
9R9O|1|C1|U|294
9R9O|1|C1|A|295
9R9O|1|C1|A|296
9R9O|1|C1|G|297
9R9O|1|C1|U|298
9R9O|1|C1|G|299
*
9R9O|1|C1|U|316
9R9O|1|C1|A|317
9R9O|1|C1|A|318
9R9O|1|C1|A|319

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13-A

Chain LN

60S ribosomal protein L15-A

Chain Lh

60S ribosomal protein L35-A

Chain Li

60S ribosomal protein L36-A