J4_9R9O_007

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9O|1|C1|G|2130
9R9O|1|C1|A|2131
9R9O|1|C1|C|2132
9R9O|1|C1|U|2133
9R9O|1|C1|G|2134
*
9R9O|1|C1|C|2146
9R9O|1|C1|A|2147
9R9O|1|C1|U|2148
9R9O|1|C1|A|2149
9R9O|1|C1|G|2150
*
9R9O|1|C1|U|2186
9R9O|1|C1|G|2187
9R9O|1|C1|A|2188
9R9O|1|C1|U|2189
9R9O|1|C1|U|2190
*
9R9O|1|C1|A|2317
9R9O|1|C1|U|2318
9R9O|1|C1|U|2319
9R9O|1|C1|A|2320
9R9O|1|C1|A|2321
9R9O|1|C1|C|2322

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain LA

60S ribosomal protein L2-A

Chain Ln

Large ribosomal subunit protein eL41B

Chain Lp

60S ribosomal protein L43-A