J4_9R9O_011

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUUAAAUC*GCC*GUAAC*GG

Length

19 nucleotides

Bulged bases

9R9O|1|C2|A|359

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9O|1|C2|C|99
9R9O|1|C2|A|100
9R9O|1|C2|U|101
9R9O|1|C2|U|102
9R9O|1|C2|A|103
9R9O|1|C2|A|104
9R9O|1|C2|A|105
9R9O|1|C2|U|106
9R9O|1|C2|C|107
*
9R9O|1|C2|G|307
9R9O|1|C2|C|308
9R9O|1|C2|C|309
*
9R9O|1|C2|G|357
9R9O|1|C2|U|358
9R9O|1|C2|A|359
9R9O|1|C2|A|360
9R9O|1|C2|C|361
*
9R9O|1|C2|G|383
9R9O|1|C2|G|384

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SI

40S ribosomal protein S8-A

Chain SL

40S ribosomal protein S11-A

Chain SX

40S ribosomal protein S23-A