J4_9R9P_004

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

9R9P|1|C1|A|1452, 9R9P|1|C1|U|1455, 9R9P|1|C1|A|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9R9P_004 not in the Motif Atlas

Homologous match to J4_9PN5_003

Geometric discrepancy: 0.0869

The information below is about J4_9PN5_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_19484.2

Basepair signature

cWW-F-cWW-F-tSS-F-cWW-F-cWW

Number of instances in this motif group

9

Unit IDs

9R9P|1|C1|C|1451
9R9P|1|C1|A|1452
9R9P|1|C1|A|1453
9R9P|1|C1|A|1454
9R9P|1|C1|U|1455
9R9P|1|C1|A|1456
9R9P|1|C1|U|1457
*
9R9P|1|C1|A|1475
9R9P|1|C1|G|1476
*
9R9P|1|C1|U|1877
9R9P|1|C1|G|1878
9R9P|1|C1|A|1879
9R9P|1|C1|U|1880
*
9R9P|1|C1|A|2352
9R9P|1|C1|G|2353

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LP

60S ribosomal protein L17-A

Chain LR

60S ribosomal protein L19-A

Chain Ld

60S ribosomal protein L31-A