J4_9RFW_012

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

9RFW|1|a|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RFW|1|a|C|2285
9RFW|1|a|G|2286
9RFW|1|a|A|2287
9RFW|1|a|A|2288
9RFW|1|a|G|2289
*
9RFW|1|a|U|2343
9RFW|1|a|U|2344
9RFW|1|a|G|2345
9RFW|1|a|A|2346
9RFW|1|a|C|2347
*
9RFW|1|a|G|2370
9RFW|1|a|G|2371
9RFW|1|a|U|2372
*
9RFW|1|a|A|2381
9RFW|1|a|G|2382
9RFW|1|a|G|2383

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL33

Chain 2

Large ribosomal subunit protein bL35

Chain n

Large ribosomal subunit protein uL18

Chain v

Large ribosomal subunit protein bL27