J4_9RHU_002
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9RHU|1|A1|A|673, 9RHU|1|A1|A|1084, 9RHU|1|A1|C|1086, 9RHU|1|A1|A|1088
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RHU|1|A1|A|672
9RHU|1|A1|A|673
9RHU|1|A1|G|674
*
9RHU|1|A1|C|1033
9RHU|1|A1|G|1034
9RHU|1|A1|A|1035
9RHU|1|A1|A|1036
9RHU|1|A1|A|1037
9RHU|1|A1|G|1038
*
9RHU|1|A1|C|1079
9RHU|1|A1|C|1080
9RHU|1|A1|A|1081
9RHU|1|A1|PSU|1082
9RHU|1|A1|A|1083
9RHU|1|A1|A|1084
9RHU|1|A1|A|1085
9RHU|1|A1|C|1086
9RHU|1|A1|G|1087
9RHU|1|A1|A|1088
9RHU|1|A1|U|1089
9RHU|1|A1|G|1090
*
9RHU|1|A1|U|1161
9RHU|1|A1|U|1162
Current chains
- Chain A1
- 18S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain F1
- eS26
- Chain W1
- Small ribosomal subunit protein uS17
- Chain Y1
- Small ribosomal subunit protein uS15
- Chain Z1
- Small ribosomal subunit protein uS11
- Chain h1
- Small ribosomal subunit protein uS8
- Chain i1
- 40S ribosomal protein S23
- Chain k2
- 60S ribosomal protein L37a
- Chain l1
- Small ribosomal subunit protein eS32
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