J4_9RHU_007

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

9RHU|1|A3|A|2209, 9RHU|1|A3|U|2212, 9RHU|1|A3|U|2671

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|OMC|2208
9RHU|1|A3|A|2209
9RHU|1|A3|A|2210
9RHU|1|A3|A|2211
9RHU|1|A3|U|2212
9RHU|1|A3|A|2213
9RHU|1|A3|U|2214
*
9RHU|1|A3|A|2232
9RHU|1|A3|G|2233
9RHU|1|A3|G|2234
*
9RHU|1|A3|OMC|2667
9RHU|1|A3|A|2668
9RHU|1|A3|U|2669
9RHU|1|A3|G|2670
9RHU|1|A3|U|2671
9RHU|1|A3|U|2672
*
9RHU|1|A3|A|3588
9RHU|1|A3|G|3589

Current chains

Chain A3

28S rRNA

Nearby chains

Chain L2

Large ribosomal subunit protein uL22

Chain N2

Ribosomal protein L19

Chain Z2

60S ribosomal protein L31