J4_9RHU_007
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- (OMC)AAAUAU*AGG*(OMC)AUGUU*AG
- Length
- 18 nucleotides
- Bulged bases
- 9RHU|1|A3|A|2209, 9RHU|1|A3|U|2212, 9RHU|1|A3|U|2671
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9RHU_007 not in the Motif Atlas
- Homologous match to J4_8GLP_004
- Geometric discrepancy: 0.0502
- The information below is about J4_8GLP_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RHU|1|A3|OMC|2208
9RHU|1|A3|A|2209
9RHU|1|A3|A|2210
9RHU|1|A3|A|2211
9RHU|1|A3|U|2212
9RHU|1|A3|A|2213
9RHU|1|A3|U|2214
*
9RHU|1|A3|A|2232
9RHU|1|A3|G|2233
9RHU|1|A3|G|2234
*
9RHU|1|A3|OMC|2667
9RHU|1|A3|A|2668
9RHU|1|A3|U|2669
9RHU|1|A3|G|2670
9RHU|1|A3|U|2671
9RHU|1|A3|U|2672
*
9RHU|1|A3|A|3588
9RHU|1|A3|G|3589
Current chains
- Chain A3
- 28S rRNA
Nearby chains
- Chain L2
- Large ribosomal subunit protein uL22
- Chain N2
- Ribosomal protein L19
- Chain Z2
- 60S ribosomal protein L31
Coloring options: