J4_9RHU_012

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU*A(PSU)GA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|G|3366
9RHU|1|A3|A|3367
9RHU|1|A3|C|3368
9RHU|1|A3|PSU|3369
9RHU|1|A3|G|3370
*
9RHU|1|A3|C|3382
9RHU|1|A3|A|3383
9RHU|1|A3|A|3384
9RHU|1|A3|A|3385
9RHU|1|A3|G|3386
*
9RHU|1|A3|U|3422
9RHU|1|A3|G|3423
9RHU|1|A3|A|3424
9RHU|1|A3|U|3425
9RHU|1|A3|U|3426
*
9RHU|1|A3|A|3553
9RHU|1|A3|PSU|3554
9RHU|1|A3|G|3555
9RHU|1|A3|A|3556
9RHU|1|A3|A2M|3557
9RHU|1|A3|C|3558

Current chains

Chain A3

28S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain D3

Large ribosomal subunit protein uL2

Chain k2

60S ribosomal protein L37a

Chain l1

Small ribosomal subunit protein eS32