J4_9RHU_013

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(UY1)G

Length

21 nucleotides

Bulged bases

9RHU|1|A3|UY1|3550

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9RHU_013 not in the Motif Atlas

Homologous match to J4_8GLP_010

Geometric discrepancy: 0.0411

The information below is about J4_8GLP_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_21738.2

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F

Number of instances in this motif group

3

Unit IDs

9RHU|1|A3|C|3428
9RHU|1|A3|U|3429
9RHU|1|A3|G|3430
*
9RHU|1|A3|C|3484
9RHU|1|A3|G|3485
*
9RHU|1|A3|C|3503
9RHU|1|A3|U|3504
9RHU|1|A3|U|3505
9RHU|1|A3|A|3506
9RHU|1|A3|A|3507
9RHU|1|A3|G|3508
9RHU|1|A3|G|3509
9RHU|1|A3|U|3510
9RHU|1|A3|A|3511
9RHU|1|A3|G|3512
*
9RHU|1|A3|U|3546
9RHU|1|A3|G|3547
9RHU|1|A3|A|3548
9RHU|1|A3|A|3549
9RHU|1|A3|UY1|3550
9RHU|1|A3|G|3551

Current chains

Chain A3

28S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain D3

Large ribosomal subunit protein uL2

Chain K1

Transfer RNA; tRNA

Chain l1

Small ribosomal subunit protein eS32