J4_9RHU_016

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUA(A2M)*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

9RHU|1|A3|U|4423

QA status

Modified nucleotides: A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|G|4333
9RHU|1|A3|U|4334
9RHU|1|A3|A|4335
9RHU|1|A3|A2M|4336
*
9RHU|1|A3|OMU|4366
9RHU|1|A3|C|4367
*
9RHU|1|A3|G|4422
9RHU|1|A3|U|4423
9RHU|1|A3|G|4424
*
9RHU|1|A3|C|4458
9RHU|1|A3|G|4459
9RHU|1|A3|C|4460
9RHU|1|A3|C|4461

Current chains

Chain A3

28S rRNA

Nearby chains

Chain E3

Ribosomal protein L3

Chain K2

Large ribosomal subunit protein uL13

Chain R2

Ribosomal protein L23