J4_9RHU_018

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CU(1MG)G*UG*CGAC(5MC)*GG

Length

13 nucleotides

Bulged bases

9RHU|1|K1|U|8, 9RHU|1|K1|C|48

QA status

Modified nucleotides: 1MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9RHU_018 not in the Motif Atlas

Homologous match to J4_4QEI_001

Geometric discrepancy: 0.1644

The information below is about J4_4QEI_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_35610.2

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW

Number of instances in this motif group

6

Unit IDs

9RHU|1|K1|C|7
9RHU|1|K1|U|8
9RHU|1|K1|1MG|9
9RHU|1|K1|G|10
*
9RHU|1|K1|U|25
9RHU|1|K1|G|26
*
9RHU|1|K1|C|44
9RHU|1|K1|G|45
9RHU|1|K1|A|46
9RHU|1|K1|C|48
9RHU|1|K1|5MC|49
*
9RHU|1|K1|G|65
9RHU|1|K1|G|66

Current chains

Chain K1

P-site tRNA-Gly

Nearby chains

Chain A3

Large subunit ribosomal RNA; LSU rRNA

Chain E2

60S ribosomal protein L10

Chain p2

Eukaryotic peptide chain release factor subunit 1