J4_9ROT_003
3D structure
- PDB id
- 9ROT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15, RBFA, and mtIF2 (State M2.1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GAG*CAAUAG*CCCUAAACCUCA*UC
- Length
- 23 nucleotides
- Bulged bases
- 9ROT|1|A|A|942, 9ROT|1|A|A|1103, 9ROT|1|A|C|1106, 9ROT|1|A|C|1108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9ROT_003 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.2613
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9ROT|1|A|G|941
9ROT|1|A|A|942
9ROT|1|A|G|943
*
9ROT|1|A|C|1052
9ROT|1|A|A|1053
9ROT|1|A|A|1054
9ROT|1|A|U|1055
9ROT|1|A|A|1056
9ROT|1|A|G|1057
*
9ROT|1|A|C|1098
9ROT|1|A|C|1099
9ROT|1|A|C|1100
9ROT|1|A|U|1101
9ROT|1|A|A|1102
9ROT|1|A|A|1103
9ROT|1|A|A|1104
9ROT|1|A|C|1105
9ROT|1|A|C|1106
9ROT|1|A|U|1107
9ROT|1|A|C|1108
9ROT|1|A|A|1109
*
9ROT|1|A|U|1132
9ROT|1|A|C|1133
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 3
- Aurora kinase A-interacting protein
- Chain J
- 28S ribosomal protein S12, mitochondrial
- Chain L
- 28S ribosomal protein S15, mitochondrial
- Chain N
- 28S ribosomal protein S17, mitochondrial
- Chain Q
- Small ribosomal subunit protein bS21m
- Chain T
- 28S ribosomal protein S25, mitochondrial
- Chain a
- Putative ribosome-binding factor A, mitochondrial
Coloring options: