J4_9RPF_003

3D structure

PDB id

9RPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and mS37 (State M4)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAG*CAAUAG*CCCUAAACCUCA*UC

Length

23 nucleotides

Bulged bases

9RPF|1|A|A|942, 9RPF|1|A|A|1103, 9RPF|1|A|C|1106, 9RPF|1|A|C|1108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9RPF_003 not in the Motif Atlas

Homologous match to J4_6CZR_013

Geometric discrepancy: 0.2751

The information below is about J4_6CZR_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.5

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9RPF|1|A|G|941
9RPF|1|A|A|942
9RPF|1|A|G|943
*
9RPF|1|A|C|1052
9RPF|1|A|A|1053
9RPF|1|A|A|1054
9RPF|1|A|U|1055
9RPF|1|A|A|1056
9RPF|1|A|G|1057
*
9RPF|1|A|C|1098
9RPF|1|A|C|1099
9RPF|1|A|C|1100
9RPF|1|A|U|1101
9RPF|1|A|A|1102
9RPF|1|A|A|1103
9RPF|1|A|A|1104
9RPF|1|A|C|1105
9RPF|1|A|C|1106
9RPF|1|A|U|1107
9RPF|1|A|C|1108
9RPF|1|A|A|1109
*
9RPF|1|A|U|1132
9RPF|1|A|C|1133

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 2

Small ribosomal subunit protein mS37

Chain 3

Aurora kinase A-interacting protein

Chain J

28S ribosomal protein S12, mitochondrial

Chain L

28S ribosomal protein S15, mitochondrial

Chain N

28S ribosomal protein S17, mitochondrial

Chain T

28S ribosomal protein S25, mitochondrial