J4_9RU7_006

3D structure

PDB id

9RU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU7|1|L5|G|3634
9RU7|1|L5|A|3635
9RU7|1|L5|C|3636
9RU7|1|L5|U|3637
9RU7|1|L5|G|3638
*
9RU7|1|L5|C|3650
9RU7|1|L5|A|3651
9RU7|1|L5|A|3652
9RU7|1|L5|A|3653
9RU7|1|L5|G|3654
*
9RU7|1|L5|U|3690
9RU7|1|L5|G|3691
9RU7|1|L5|A|3692
9RU7|1|L5|U|3693
9RU7|1|L5|U|3694
*
9RU7|1|L5|A|3821
9RU7|1|L5|U|3822
9RU7|1|L5|G|3823
9RU7|1|L5|A|3824
9RU7|1|L5|A2M|3825
9RU7|1|L5|C|3826

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Ln

60S ribosomal protein L41

Chain Lp

Large ribosomal subunit protein eL43

Chain S2

Small subunit ribosomal RNA; SSU rRNA