J4_9RVC_006
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CC*GAGUAC*GGAAUCUG*UAAG
- Length
- 20 nucleotides
- Bulged bases
- 9RVC|1|a|U|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9RVC_006 not in the Motif Atlas
- Homologous match to J4_7A0S_001
- Geometric discrepancy: 0.1987
- The information below is about J4_7A0S_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.3
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
9RVC|1|a|C|271
9RVC|1|a|C|272
*
9RVC|1|a|G|416
9RVC|1|a|A|417
9RVC|1|a|G|418
9RVC|1|a|U|419
9RVC|1|a|A|420
9RVC|1|a|C|421
*
9RVC|1|a|G|445
9RVC|1|a|G|446
9RVC|1|a|A|447
9RVC|1|a|A|448
9RVC|1|a|U|449
9RVC|1|a|C|450
9RVC|1|a|U|451
9RVC|1|a|G|452
*
9RVC|1|a|U|467
9RVC|1|a|A|468
9RVC|1|a|A|469
9RVC|1|a|G|470
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: