J4_9RVC_007
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAU*AAUC*GAA*UGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9RVC_007 not in the Motif Atlas
- Homologous match to J4_7A0S_002
- Geometric discrepancy: 0.0971
- The information below is about J4_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
9RVC|1|a|C|340
9RVC|1|a|G|341
9RVC|1|a|A|342
9RVC|1|a|A|343
9RVC|1|a|U|344
*
9RVC|1|a|A|359
9RVC|1|a|A|360
9RVC|1|a|U|361
9RVC|1|a|C|362
*
9RVC|1|a|G|366
9RVC|1|a|A|367
9RVC|1|a|A|368
*
9RVC|1|a|U|380
9RVC|1|a|G|381
9RVC|1|a|U|382
9RVC|1|a|A|383
9RVC|1|a|G|384
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- Large ribosomal subunit protein uL4
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: