J4_9RVC_008
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CGUAG*CGAGU*GCGUUUAG
- Length
- 22 nucleotides
- Bulged bases
- 9RVC|1|a|U|699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9RVC_008 not in the Motif Atlas
- Homologous match to J4_8B0X_006
- Geometric discrepancy: 0.3871
- The information below is about J4_8B0X_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RVC|1|a|C|644
9RVC|1|a|A|645
9RVC|1|a|A|646
9RVC|1|a|G|647
*
9RVC|1|a|C|669
9RVC|1|a|G|670
9RVC|1|a|U|671
9RVC|1|a|A|672
9RVC|1|a|G|673
*
9RVC|1|a|C|680
9RVC|1|a|G|681
9RVC|1|a|A|682
9RVC|1|a|G|683
9RVC|1|a|U|684
*
9RVC|1|a|G|694
9RVC|1|a|C|695
9RVC|1|a|G|696
9RVC|1|a|U|697
9RVC|1|a|U|698
9RVC|1|a|U|699
9RVC|1|a|A|700
9RVC|1|a|G|701
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain e
- Large ribosomal subunit protein uL4
- Chain k
- Large ribosomal subunit protein uL15
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