J4_9RVC_013
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACUG*CACAG*UGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9RVC_013 not in the Motif Atlas
- Homologous match to J4_7A0S_008
- Geometric discrepancy: 0.0736
- The information below is about J4_7A0S_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.6
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9RVC|1|a|G|1799
9RVC|1|a|A|1800
9RVC|1|a|C|1801
9RVC|1|a|U|1802
9RVC|1|a|G|1803
*
9RVC|1|a|C|1815
9RVC|1|a|A|1816
9RVC|1|a|C|1817
9RVC|1|a|A|1818
9RVC|1|a|G|1819
*
9RVC|1|a|U|1854
9RVC|1|a|G|1855
9RVC|1|a|A|1856
9RVC|1|a|C|1857
*
9RVC|1|a|G|2002
9RVC|1|a|U|2003
9RVC|1|a|A|2004
9RVC|1|a|A|2005
9RVC|1|a|C|2006
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: