J4_9RVC_016
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAGC*GAC*GGACG*CCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9RVC_016 not in the Motif Atlas
- Homologous match to J4_8B0X_014
- Geometric discrepancy: 0.1499
- The information below is about J4_8B0X_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.5
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9RVC|1|a|G|2670
9RVC|1|a|A|2671
9RVC|1|a|G|2672
9RVC|1|a|C|2673
*
9RVC|1|a|G|2701
9RVC|1|a|A|2702
9RVC|1|a|C|2703
*
9RVC|1|a|G|2758
9RVC|1|a|G|2759
9RVC|1|a|A|2760
9RVC|1|a|C|2761
9RVC|1|a|G|2762
*
9RVC|1|a|C|2796
9RVC|1|a|C|2797
9RVC|1|a|C|2798
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain J
- Large ribosomal subunit protein uL13
- Chain U
- Large ribosomal subunit protein uL14
- Chain d
- Large ribosomal subunit protein uL3
Coloring options: