J4_9S7D_009

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUAG*CG*CAAUU*AU

Length

13 nucleotides

Bulged bases

9S7D|1|Aw|U|8, 9S7D|1|Aw|U|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9S7D_009 not in the Motif Atlas

Homologous match to J4_2D6F_002

Geometric discrepancy: 0.3538

The information below is about J4_2D6F_002

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_35610.2

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW

Number of instances in this motif group

6

Unit IDs

9S7D|1|Aw|A|7
9S7D|1|Aw|U|8
9S7D|1|Aw|A|9
9S7D|1|Aw|G|10
*
9S7D|1|Aw|C|25
9S7D|1|Aw|G|26
*
9S7D|1|Aw|C|44
9S7D|1|Aw|A|45
9S7D|1|Aw|A|46
9S7D|1|Aw|U|48
9S7D|1|Aw|U|49
*
9S7D|1|Aw|A|65
9S7D|1|Aw|U|66

Current chains

Chain Aw

A-site tRNA (Visualisation example)

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA