J4_9SRC_002
3D structure
- PDB id
- 9SRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CAGCGUAG*C(4AC)*GUGUC*GG
- Length
- 17 nucleotides
- Bulged bases
- 9SRC|1|1|U|1533, 9SRC|1|1|A|1534
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9SRC_002 not in the Motif Atlas
- Homologous match to J4_4V9F_003
- Geometric discrepancy: 0.158
- The information below is about J4_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_75426.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9SRC|1|1|C|1528
9SRC|1|1|A|1529
9SRC|1|1|G|1530
9SRC|1|1|C|1531
9SRC|1|1|G|1532
9SRC|1|1|U|1533
9SRC|1|1|A|1534
9SRC|1|1|G|1535
*
9SRC|1|1|C|1553
9SRC|1|1|4AC|1554
*
9SRC|1|1|G|1919
9SRC|1|1|U|1920
9SRC|1|1|G|1921
9SRC|1|1|U|1922
9SRC|1|1|C|1923
*
9SRC|1|1|G|2250
9SRC|1|1|G|2251
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BQ
- Large ribosomal subunit protein eL19
- Chain BS
- Large ribosomal subunit protein uL22
- Chain Ba
- Large ribosomal subunit protein eL31
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