J4_9SRE_008
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- CUAAG*CUGAC*GCC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 9SRE|1|1|A|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9SRE_008 not in the Motif Atlas
- Homologous match to J4_4V9F_009
- Geometric discrepancy: 0.2036
- The information below is about J4_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9SRE|1|1|C|2516
9SRE|1|1|U|2517
9SRE|1|1|A|2518
9SRE|1|1|A|2519
9SRE|1|1|G|2520
*
9SRE|1|1|C|2574
9SRE|1|1|U|2575
9SRE|1|1|G|2576
9SRE|1|1|A|2577
9SRE|1|1|C|2578
*
9SRE|1|1|G|2604
9SRE|1|1|C|2605
9SRE|1|1|C|2606
*
9SRE|1|1|G|2615
9SRE|1|1|U|2616
9SRE|1|1|G|2617
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BO
- Large ribosomal subunit protein uL18
- Chain BR
- Large ribosomal subunit protein eL21
- Chain Bj
- Large ribosomal subunit protein eL42
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