J4_9SRO_007

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9SRO|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9SRO_007 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2824

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9SRO|1|a|C|268
9SRO|1|a|C|269
*
9SRO|1|a|G|370
9SRO|1|a|A|371
9SRO|1|a|G|372
9SRO|1|a|U|373
9SRO|1|a|A|374
9SRO|1|a|G|375
*
9SRO|1|a|U|399
9SRO|1|a|G|400
9SRO|1|a|A|401
9SRO|1|a|A|402
9SRO|1|a|U|403
9SRO|1|a|A|404
9SRO|1|a|U|405
9SRO|1|a|G|406
*
9SRO|1|a|C|421
9SRO|1|a|A|422
9SRO|1|a|A|423
9SRO|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28